This is an incomplete list of software we at bioformconsult are very familiar with, and if a customer's task can be solved using one of these applications we will recommend to use it. Of course we are always ready to implement other applications on customer's wish.

Scripting and general data handling

Linux, Python, Biopython, R, C

Biostatistics and data visualisation

R, JASP, PAST, Plotly, Inkscape

Phylogenetics

phylip, MEGA, MrBayes, BEAST & Beauti, TreeView, Figtree

Population genetics

Structure, FineStructure, Arlequin, Spagedi, tinyFLP, optiFLP, Migrate

NGS assembly and variant calling

FastQC, BWA, GATK, samtools, bedtools, EggNogg, Trinity, ORFfinder

PCR and primer design

Primer3, UCSC Genome Browser, PerlPrimer, bioinformatic.org tools